SNP Profiles of CC 137 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CT	CC	TT	GT	AT	CC	CT	GG	GG	AA	TT	AC
1._RUQ_1637	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
2._RUQ_1637	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
3._CC_137	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
4._CC_137	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
5._CC_137	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
6._CC_137	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
7._CC_137	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
8._GC-01-134-7-11	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
9._GC-01-134-7-11	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
10._GC-01-134-7-11	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
11._GC-01-134-7-11	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
12._RUQ_1637	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
13._MITC-000809	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
14._CC_137	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
15._GC-01-134-7-11	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CC	CC	CT	AC	GG	CC	TT	CC	CC	TT	AG	CG
1._RUQ_1637	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
2._RUQ_1637	AG	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
3._CC_137	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
4._CC_137	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
5._CC_137	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
6._CC_137	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
7._CC_137	_	_	_	_	_	CC	_	CC	_	_	_	_	_	_
8._GC-01-134-7-11	AG	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
9._GC-01-134-7-11	AG	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
10._GC-01-134-7-11	AG	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
11._GC-01-134-7-11	AG	_	_	_	_	CC	_	CC	_	CC	CC	_	_	_
12._RUQ_1637	AG	_	_	_	_	CC	_	CC	_	CC	GG	_	_	_
13._MITC-000809	AG	_	_	_	_	CC	_	CC	_	CC	GG	_	_	_
14._CC_137	_	_	_	_	_	CC	_	CC	_	CC	_	_	_	_
15._GC-01-134-7-11	AG	_	_	_	_	CC	_	CC	_	CC	CT	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CG	TT	GG	GG	CT	CT	AC	AA	TT	GG	AG	CC	AG
1._RUQ_1637	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
2._RUQ_1637	_	_	TT	GG	GG	_	_	AC	_	_	GG	AA	_	AG
3._CC_137	GG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
4._CC_137	GG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
5._CC_137	GG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
6._CC_137	GG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
7._CC_137	AG	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
8._GC-01-134-7-11	GG	_	CT	GG	GG	_	_	AC	_	GG	GG	AG	_	AG
9._GC-01-134-7-11	GG	_	CT	GG	GG	_	_	AC	_	GG	GG	AG	_	AG
10._GC-01-134-7-11	GG	_	CT	GG	GG	_	_	AC	_	GG	GG	AG	_	AG
11._GC-01-134-7-11	GG	_	CT	GG	GG	_	_	AC	_	GG	GG	AG	_	AG
12._RUQ_1637	_	_	_	CC	GG	_	_	AC	_	CC	CC	AG	_	AG
13._MITC-000809	_	_	_	CC	GG	_	_	AC	_	CC	CC	AG	_	AG
14._CC_137	AA	_	_	GT	_	_	_	_	_	_	CC	_	_	AA
15._GC-01-134-7-11	AA	_	CC	GT	GG	_	_	AC	_	GG	CC	GG	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	AA	CC	AA	TT	CT	TT	AC	CC	TT	GG	TT	GG
1._RUQ_1637	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
2._RUQ_1637	TT	_	_	_	_	_	_	_	_	_	TT	_	_	_
3._CC_137	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
4._CC_137	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
5._CC_137	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
6._CC_137	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
7._CC_137	_	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
8._GC-01-134-7-11	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
9._GC-01-134-7-11	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
10._GC-01-134-7-11	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
11._GC-01-134-7-11	TT	_	_	_	AA	_	CT	_	_	_	TT	_	_	_
12._RUQ_1637	_	_	_	_	AA	_	_	_	_	_	AA	_	_	_
13._MITC-000809	_	_	_	_	AA	_	_	_	_	_	AA	_	_	_
14._CC_137	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
15._GC-01-134-7-11	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_

	57	58	59	60
_Input profile	GG	CG	CT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1637	_	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1637	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._CC_137	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._CC_137	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CC_137	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CC_137	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._CC_137	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-134-7-11	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-134-7-11	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-134-7-11	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-134-7-11	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_1637	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._MITC-000809	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._CC_137	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-134-7-11	_	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CC_137 RUQ_1637

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._CC_137 RUQ_1637

95.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._CC_137 RUQ_1637

94.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._CC_137

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 6

Dapeng Zhang, 2016

4._CC_137

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 5

Dapeng Zhang, 2016

5._CC_137

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._CC_137

92.3 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 1

Dapeng Zhang, 2016

7._CC_137

91.7 %
12 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

8._CC_137 GC-01-134-7-11

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._CC_137 GC-01-134-7-11

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._CC_137 GC-01-134-7-11

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

11._CC_137 GC-01-134-7-11

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

12._CC_137 RUQ_1637

64.7 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

13._CC_137 MITC-000809

64.7 %
17 shared markers

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USDA-SHRS, United States of America

14._CC_137

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 4

Dapeng Zhang, 2016

15._CC_137 GC-01-134-7-11

59.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527